HPC MSU

Publications of the HPC²

Publications by HPC centers and institutes include items from past years such as an early publication written by one of the HPC founding investigators, Dr. Joe Thompson. Numerical Grid Generation was originally published by Elsevier Science Publishing Co., Inc. in 1985, and the copyright was transferred to Joe F. Thompson in 1997.

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Book or Book Chapter
Mehrotra, R., Dubey, A., Abdelwahed, S., & Tantawi, A. (2012). A Power-aware Modeling and Autonomic Management Framework for Distributed Computing Systems. In S. Ranka and I. Ahmad (Eds.), Handbook of Energy-Aware and Green Computing. Chapman and Hall: CRC Press.

Peer-Reviewed Journals
Jang, C., Lacy, T., Gwaltney, S. R., Toghiani, H., & Pittman, C. (2012). A Relative Reactivity Volume Criterion for Crosslinking: Application to Vinyl Ester Resin Molecular Dynamics Simulations. Macromolecules(Accepted). ., .DOI:dx.doi.org/10.1021/ma202754d. [Abstract] [Document]

Dayal, S., Clay, R. T., & Mazumdar, S. (2012). Absence of Long-range Superconducting Correlations in the Frustrated Half-filled-band Hubbard Model. Physical Review B. American Physical Society. 85(16), 165141.

Huang, Y., Thomson, S. J., Molin, W. T., Reddy, K. N., & Yao, H. (2012). Early Detection of Soybean Plant Injury from Glyphosate by Measuring Chlorophyll Reflectance and Fluorescence. Journal of Agricultural Science. 4(5), 117-124.

Tang, T., Hammi, Y., Horstemeyer, M., & Wang, P. (2012). Finite Element Micromechanical Analysis of the Deformation and Stress State Dependent Damage Evolution in Fiber Reinforced Metal Matrix Composites. Computational Materials Science. 59, 165–173.

Cheshier, J., Madsen, J. D., Wersal, R. M., Gerard, P. D., & Welch, M. E. (2012). Evaluating the Potential for Differential Susceptibility of Common Reed (Phragmites Australis) Haplotypes I and M to Aquatic Herbicides. Invasive Plant Science and Management. 5, 101-105. DOI:10.1614/IPSM-D-11-00051.1. [Document]

Asle Zaeem, M., Yin, H., & Felicelli, S. D. (2012). Comparison of Cellular Automaton and Phase Field Methods to Simulate Dendrite Growth in Hexagonal Systems. Journal of Materials Science and Technology. Elsevier. 28(2), 137-146. [Abstract] [Document Site]

Jordon, J. B., Bernard, J.D., & Newman, J., Jr. (2012). Quantifying Microstructurally Small Fatigue Crack Growth in an Aluminum Alloy using a Silicon-rubber Replica Method. International Journal of Fatigue. Elsevier. 36(1), 206-210. [Abstract]

Walton, C., Martin, H. J., Horstemeyer, M., & Wang, P. (2012). Quantification of Corrosion Mechanisms Under Immersion and Salt-spray Environments on an Extruded AZ31 Magnesium Alloy. Corrosion Science. 56, 194-208.

Jang, C., Nouranian, S., Lacy, T., Gwaltney, S. R., Toghiani, H., & Pittman, C. (2012). Molecular Dynamics Simulations of Oxidized Vapor-grown Carbon Nanofiber Surface Interactions with Vinyl Ester Resin Monomers. Carbon. 50(3), 748-760. DOI:10.1016/j.carbon.2011.09.013. [Abstract] [Document Site]

Fowler, J. E., & Tramel, E. W. (2012). Block-based Compressed Sensing of Images and Video. Foundations and Trends in Signal Processing. 4(4), 297-416.

Li, B., El Kadiri, H., & Horstemeyer, M. (2012). Extended Zonal Dislocations Mediating {11-22} Twinning in Titanium. Philosophical Magazine. 92(8), 1006-1022.

Majure, L. C., Judd, W. S., Soltis, P. S., & Soltis, D. E. (2012). Cytogeography of the Humifusa Clade of Opuntia S.s. Mill. 1754 (Cactaceae, Opuntioideae, Opuntieae): Correlations with Pleistocene Refugia and Morphological Traits in a Polyploid Complex. Comparative Cytogenetics. 6(1), 53-77. DOI:10.3897/CompCytogen.v6i1.2523. [Abstract] [Document]

Florea, R. S., Solanki, K.N., Bammann, D., Baird, J., Jordon, B. J., & Castanier, M. P. (2012). Resistance Spot Welding of 6061-T6 Aluminum Alloy: Failure Loads and Deformation. Materials and Design. Elsevier. 34, 624-630.

Tschopp, M. A., Solanki, K.N., Baskes, M. I., Gao, F., Sun, X., Khaleel, M., & Horstemeyer, M. (2012). Probing Grain Boundary Sink Strength at the Nanoscale: Energetics and Length Scales of Vacancy and Interstitial Absorption by Grain Boundaries in Alpha-Fe. Physical Review B. 85, 064108. DOI:10.1103/PhysRevB.85.064108. [Document Site]

Huskins, E., Cao, B. Y., Li, B., & Ramesh, K. T. (2012). Temperature-dependent Mechanical Response of an UFG Aluminum Alloy at High Rates. Experimental Mechanics. 52(2), 185-194.

Li, B., Joshi, S. P., Almagri, O., Ma, Q., Ramesh, K. T., & Mukai, T. (2012). Rate-dependent Hardening Due to Twinning in Ultrafine-grained Magnesium Alloy. Acta Materialia. 60(4), 1818-1826.

Tang, T., Horstemeyer, M., & Wang, P. (2012). Micromechanical Analysis of Thermoelastoplastic Behavior of Metal Matrix Composites. International Journal of Engineering Science. 51, 161-167.

Alihosseini, H., Asle Zaeem, M., Dehghani, K., & Shivaee, H. A. (2012). Producing Ultrafine-grained Aluminum Rods by Cyclic Forward-backward Extrusion: Study the Microstructures and Mechanical Properties. Materials Letters. Elsevier. 74, 147-150. [Abstract] [Document Site]

Bellgard, M. I., Moolhuijzen, P. M., Guerrero, F. D., Schibeci, D., Rodriguez-Valle, M., Peterson, D. G., Dowd, S. E., Barrero, R., Hunter, A., Miller, R. J., & Lew-Tabor, A. E. (2012). CattleTickBase: An Integrated Internet-based Bioinformatics Resource for Rhipicephalus (Boophilus) Microplus. International Journal for Parasitology. 42(2), 161-169. DOI:10.1016/j.ijpara.2011.11.006. [Abstract] [Document] [Document Site]

StJohn, J. A., Du, Q., Yang, H., Braun, E. L., Chen, G., Isberg, S. R., Miles, L. G., Chong, A. Y., Gongora, J., Dalzell, P., Moran, C., Bed'hom, B., Abzhanov, A., Burgess, S. C., Cooksey, A. M., Castoe, T. A., Crawford, N. G., Densmore, L. D., Drew, J. C., Edwards, S. V., Faircloth, B. C., Fujita, M. K., Greenwold, M. J., Hoffmann, F. G., Howard, J. M., Iguchi, T., Janes, D. E., Khan, S. Y., Kohno, S., DeKoning, A. J., Lance, S. L., McCarthy, F.M., McCormack, J. E., Merchant, M. E., Peterson, D. G., Pollock, D. D., Pourmand, N., Raney, B. J., Roessler, K. A., Sanford, J. R., Sawyer, R. H., Schmidt, C. J., Triplett, E. W., Tuberville, T. D., Venegas-Anaya, M., Howard, J. T., Jarvis, E. D., , L. J. G. J., Glenn, T. C., Green, R. E., & Ray, D. (2012). Sequencing Three Crocodilian Genomes to Illuminate the Evolution of Archosaurs and Amniotes. Genome Biology. 13(1), 415. DOI:10.1186/gb-2012-13-1-415. [Abstract] [Document] [Document Site]

Huenemann, T. W., Dibble, E. D. (2012). Influence of Turbidity on the Foraging of Largemouth Bass. Transactions of the American Fisheries Society. 141, 107-111.

Bhushan, S., & Walters, K. (2012). A Dynamic Hybrid Reynolds-averaged Navier Stokes-Large Eddy Simulation Modeling Framework. Physics of Fluids. 24, 1-7.

Luke, E., Collins, E.M., & Blades, E. L. (2012). A Fast Mesh Deformation Method using Explicit Interpolation. Journal of Computational Physics. 231(2), 586-601. [Abstract]

Gokaraju, B., Durbha, S. S., King, R., & Younan, N. H. (2012). Ensemble Methodology using Multi-stage Learning for Improved Detection of Harmful Algal Blooms. IEEE GEOSCIENCE AND REMOTE SENSING LETTERS. IEEE Geoscience and Remote Sensing Society (GRSS). PP(99), 1-5. DOI:10.1109/LGRS.2011.2182032. [Document Site]

Chouvarine, P., Cooksey, A. M., McCarthy, F.M., Ray, D., Baldwin, B. S., Burgess, S. C., & Peterson, D. G. (2012). Transcriptome-based Differentiation of Closely-related Miscanthus Lines. PLoS ONE. 7(1), e29850. DOI:10.1371/journal.pone.0029850. [Abstract] [Document] [Document Site]

Turlapaty, A.C., Gokaraju, B., Du, Q., Younan, N. H., & Aanstoos, J.V. (2012). A Multi-level Approach for Automatic Building Extraction from Multi-angular Optical Imagery. Selected Topics in Applied Earth Observations and Remote Sensing, IEEE Journal of. IEEE Geoscience and Remote Sensing Society (GRSS) and IEEE Committee on Earth Ob. 5(1), 89 - 100. DOI:10.1109/JSTARS.2011.2179792. [Abstract] [Document Site]

Li, D. S., Tschopp, M. A., Khaleel, M., & Sun, X. (2012). Comparison of Reconstructed Spatial Microstructure Images using Different Statistical Descriptors. Computational Materials Science. 51(1), 437-444. [Document Site]

Tschopp, M. A., & El Kadiri, H. (2012). Automated Analysis of Twins in Hexagonal Close-packed Metals Using Molecular Dynamics. Scripta Materialia. 66, 666-669. [Document Site]

Solanki, K.N., Moitra, A., & Tschopp, M. A. (2012). Investigating Damage Evolution at the Nanoscale: Molecular Dynamics Simulations of Nanovoid Growth in Single Crystal Aluminum. Metallurgical and Materials Transactions A. 1, 1-10. [Document Site]

Alarcon, V. J., & McAnally, W. H. (2012). A Strategy for Estimating Nutrient Concentrations using Remote Sensing Datasets and Hydrological Modeling. International Journal of Agricultural and Environmental Information Systems. 3(1), 1-13. DOI:10.4018/jaeis.2012010101.

Asle Zaeem, M., El Kadiri, H., Horstemeyer, M., Khafizov, M., & Utegulov, Z. (2012). Effects of Internal Stresses and Intermediate Phases on the Coarsening of Coherent Precipitates: A Phase-field Study. Current Applied Physics. Elsevier. 12, 570-580. [Abstract] [Document Site]

Alihosseini, H., Asle Zaeem, M., & Dehghani, K. (2012). A Cyclic Forward-backward Extrusion Process as a Novel Severe Plastic Deformation for Production of Ultrafine Grains Materials. Materials Letters. 68, 204-208. [Abstract] [Document Site]

Fowler, J. E., & Du, Q. (2012). Anomaly Detection and Reconstruction from Random Projections. IEEE Transactions on Image Processing. 21(1), 184-195.

Peer-Reviewed Conference Abstracts
Garrison, T., & Carruth, D. (2012). Impact of Dispatch Communication and Display Characteristics on Law Enforcement Patrol Situation Awareness. Proceedings of the 15th Annual Applied Ergonomics Conference 2012. Nashville, TN: GOErgo/IIE.

Asle Zaeem, M., Nouranian, S., Horstemeyer, M., & Wang, P. (2012). Morphological Study of Polymer Crystallization by a Phase-Field Model. Conference abstract, TMS 2012 Annual Meeting and Exhibition, March 11-15. Orlando, FL. [Abstract]

Harris, R., Liever, P., Luke, E., & Dudley, J. (2012). Rigid Body Collision Modeling for Multiple-Body Proximate Flight Simulation in Loci/CHEM. 50th AIAA Aerospace Sciences Meeting. Nashville, TN: AIAA. AIAA-2012-1236.

Peer-Reviewed Conference Papers
Jang, C., Lacy, T., Gwaltney, S. R., Toghiani, H., & Pittman, C. (2012). Molecular Dynamics Simulation of Vinyl Ester Resin Crosslinking. 53rd AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dyanmics, and Materials Conference. Honolulu, Hawaii. [Document]

Clay, R. T., Dayal, S., Li, H., & Mazumdar, S. (2012). Beyond the Quantum Spin Liquid Concept in Frustrated Two Dimensional Organic Superconductors. Physica Status Solidi B. ISCOM 2011, Gnienzo, Poland. 249(5), 991-994.

Mazumdar, S., & Clay, R. T. (2012). Is There a Common Theme Behind the Correlated-electron Superconductivity in Organic Charge-transfer Solids, Cobaltates, Spinels and Fullerides? Physica Status Solidi B. ISCOM 2011, Gniezno, Poland. 249(5), 995-998.

Tankersley, C., & Dandass, Y. (2012). PCI Probe: A Tool for Testing PCIe Peripheral Devices in 64-bit Windows 7. ISCA 27th International Conference on Computers and Their Applications (CATA-2012), . Las Vegas, NV.

Donaldson, T., & Dandass, Y. (2012). A Low Occupancy Study of Artificial Neural Networks on GPUs. ISCA 27th International Conference on Computers and Their Applications (CATA-2012), . Las Vegas, NV.

Mazumdar, S., Clay, R. T., & Li, H. (2012). Similarities in Electronic Properties of Organic Charge-transfer Solids and Layered Cobaltates. Physica B. ECRYS 2011, Cargese, Corsica, France. 407, 1722-1724.

Tang, J., Perkins, A., Sonstegard, T., Schroeder, S., Burgess, S., & Diehl, S. V. (2012). Short Read Sequencing for genomic analysis of the brown rot fungus Fibroporia radiculosa. Applied and Environmental Microbiology.

Morris, T., Vaughn, R., & Dandass, Y. (2012). A Retrofit Network Intrusion Detection System for MODBUS RTU and ASCII Industrial Control Systems. Proceedings of the 45th Hawaii International Conference on System Sciences. Maui, HI: IEEE. [Abstract]

Peer-Reviewed Conference Posters
Davis, B., & Asle Zaeem, M. (2012). Investigating the Effects of Grain Boundary Energy Anisotropy and Second-phase Particles on the Grain Growth of an HCP Metal. American Society for Engineering Education Annual Conference. Mississippi State University. [Document]

Singh, G., Swan, J. E., Jones, J.A., & Ellis, S. R. (2012). Depth Judgments by Reaching and Matching in Near-field Augmented Reality. Proceedings of IEEE Virtual Reality 2012. Orange County, CA.

Srivastava, S., Mehrotra, R., Banicescu, I., & Abdelwahed, S. (2012). A Model-based Framework for Autonomic Performance Management of Cloud Computing Systems. 15th SIAM Conference on Parallel Processing for Scientific Computing. Savannah, GA.

Non-Refereed Conference Abstracts
Ramirez-Avila, J. J., Ortega-Achury, S. L., McAnally, W. H., & Martin, J. (2012). Runoff Quality Effects of Simulated Conservation Practice Scenarios in a Mississippi Delta's Watershed. 2012 Mississippi Water Resources Conference. Jackson, MS. [Abstract] [Document Site]

Ortega-Achury, S. L., Kroger, R., Ramirez-Avila, J. J., & Diaz-Ramirez, J. (2012). Evaluation and Validation of a Decision Support System for Selection and Placement of BMPs in the Mississippi Delta. 2012 Mississippi Water Resources Conference. Jackon, MS. [Abstract] [Document Site]

Clay, R. T., Song, J. P., Dayal, S., & Mazumdar, S. (2012). Ground State and Finite Temperature Behavior of 1/4-filled Zigzag Ladders. Bulletin of the American Physical Society. Boston, MA: American Physical Society. 57(1). [Document] [Document Site]

Dayal, S., Clay, R. T., & Mazumdar, S. (2012). Superconducting Pair-pair Correlations in the Half-filled Hubbard Model on the Anisotropic Triangular Lattice: Absence of Long-range Order. Bulletin of the American Physical Society. Boston, MA: American Physical Society. 57(1). [Document] [Document Site]

Madsen, J. D., Maddox, V. L., Ervin, G. N., & Wersal, R. M. (2012). EDRR and the Invasive Plant Atlas of the MidSouth Project. Society of Range Management Annual Meeting. Spokane, WA. [Abstract]

Madsen, J. D., & Wersal, R. M. (2012). Evaluating the Effectiveness and Potential Interactions of Combining Triclopyr and 2,4-D for Eurasian Watermilfoil Control. Northeast Aquatic Plant Management Society Annual Meeting. New Castle, New Hampshire, January 17-19 2012. [Abstract]

Non-Refereed Conference Papers
Yao, H., Hruska, Z., Kincaid, R., Brown, R. L., Bhatnagar, D., & Cleveland, T. E. (2012). Utilizing Fluorescence Hyperspectral Imaging to Differentiate Corn Inoculated with Toxigenic and Atoxigenic Fungal Strains. Proceedings of 2012 SPIE Conference, “Sensing for Agriculture and Food Quality and Safety IV", 8369-10, April 24-25. Baltimore, MD.

Madsen, J. D. (2012). Guidance to Aquatic Plant Managers on Methods to Monitor and Assess Nuisance Plant Control. CropLife America and RISE 2012 Spring Conference: Precision, Policy, Progress. Arlington, VA: CropLife America, April 5-6 2012.

Madsen, J. D., & Wersal, R. M. (2012). Evaluating the Effectiveness and Potential Interactions of Combining Triclopyr and 2,4-D for Eurasian Watermilfoil Control. Midwest Aquatic Plant Management Society 32nd Annual Conference. Milwaukee, WI.

Madsen, J. D. (2012). A Review of Early Season Curlyleaf Pondweed Control Strategies. Midwest Aquatic Plant Management Society 32nd Annual Conference. Milwaukee, WI.

Spickard, M. R., & Dibble, E. D. (2012). Patterns of Faunal Diversity Associated with Altered Macrophyte Coverage. Southern Division/Mississippi American Fisheries Society 2012 Joint Meeting. Biloxi, MS.

Non-Refereed Conference Posters
Ramirez-Avila, J. J., Langendoen, E. J., McAnally, W. H., Ortega-Achury, S. L., Martin, J., & Bingner, R. (2012). Assessing and Modeling Sediment Loads from Stream Corridor Erosion along the Town Creek in Mississippi. 2012 Mississippi Water Resources Conference. Jackson, MS. [Abstract] [Document Site]

Sanders, W. S., Showmaker, K. C., Wang, H., Ganji, S., Wubben, M., McCarthy, F.M., Magbanua, Z. V., & Peterson, D. G. (2012). The Rotylenchulus Reniformis Genome: Sequencing, Assembly, and Annotation. Plant and Animal Genomes XX. San Diego, CA. [Abstract] [Document]

In-House
Madsen, J. D., Wersal, R. M., Fernandez, A., & Turnage, G. (2012). Lake Havasu Aquatic Plant Monitoring 2011 Interim Report. GRI Report #4008. Mississippi State University: Geosystems Research Institute. [Document]

Sartain, B., Madsen, J. D., & Wersal, R. M. (2012). Aquatic Plant Community Assessment within the Littoral Zone of the Ross Barnett Reservoir, MS in 2011: A Seven Year Evaluation. GRI Report #5053. Mississippi State University: Geosystems Research Institute. [Document]

Hodge, S., Czarnecki, J. M., & McBride, D. W. (2012). The Portal Newsletter. Mississippi State University: Northern Gulf Institute. [Document]

Turnage, G., Fernandez, A., Sartain, B., & Madsen, J. D. (2012). 2011 Mississippi Survey for Hydrilla and Giant Salvinia. GRI Report #5052. Mississippi State University: Geosystems Research Institute. [Document]

Madsen, J. D., Amburn, P., Brown, R., Dibble, E. D., Ervin, G. N., Abbott, C. F., Brooks, C., Irby, D., Lee, S. M., Maddox, V. L., Schulz, R., Wasson, L. L., Wersal, R. M., Woolf, T., McBride, D. W., & Madsen, N. (2012). Research to Support Integrated Management Systems of Aquatic and Terrestrial Invasive Species. Geosystems Research Institute Report GRI#5051. Mississippi State University: Geosystems Research Institute. [Document]

Technical Report
Wersal, R. M., & Madsen, J. D. (2012). Aquatic Plants Their Uses and Risks: A Review of the Global Status of Aquatic Plants. Viale delle Terme di Caracalla, Rome, Italy: The International Plant Protection Convention, Food and Agriculture Organization, United Nations. 94. [Document]

Ramirez-Avila, J. J., & Ortega-Achury, S. L. (2012). Application of the APEX Model to Determine Water Quality Assessments in Agricultural Fields in the Mississippi Delta. Mississippi State University: Geosystems Research Institute. 62 pp.[Abstract]

Ramirez-Avila, J. J., & McAnally, W. H. (2012). A Sediment Budget for the Tombigbee River Basin and the Mobile River Basin. Mississippi State University: Geosystems Research Institute.

Professional Presentations
Garrison, T., Williams, C., Carruth, D. (2012). Impact of Dispatch Communication and Display Characteristics on Law Enforcement Patrol Situation Awareness. Officer Safety and Wellness Meeting. Washington, DC: Office of Justice Programs: Bureau of Justice Assistance and Community Oriented Policing Services.

Madsen, J. D. (2012). Aquatic Plant Distribution Assessment within the Littoral Zone of the Ross Barnett Reservoir, MS in 2011: A Seven Year Evaluation. Pearl River Valley Water Supply District Board of Directors Meeting. Jackson, MS: Pearl River Valley Water Supply District.

Wersal, R. M., & Madsen, J. D. (2012). Aquatic Plants: Uses and Risks. 7th Session of the Commission on Phytosanitary Measures.. Viale delle Terme di Caracalla, Rome, Italy: The International Plant Protection Convention, Food and Agricutlure Organization, United Nations.

Madsen, J. D. (2012). Why Control Aquatic Invasive Species? 2012 Minnesota Aquatic Invasive Species Symposium: The Latest in Research and Policy. St. Paul, MN: Minnesota Association of Watershed Districts.

Madsen, J. D. (2012). Advantages and Disadvantages of Plant Control Methods. 2012 Minnesota Aquatic Invasive Species Symposium: The Latest in Research and Policy. St. Paul, MN: Minnesota Association of Watershed Districts.

Dennis, G. (2012). Plant Master Planning. Mississippi Engineering Society 2012 Winter Meeting. Hilton Hotel - Jackson, MS.. [Abstract]

Tang, T. (2012). Variational Asymptotic Micromechanics Modeling of Three-phase Piezoelectric Nanocomposites. 2012 TMS Annual Meeting & Exhibition, Orlando, FL.

Manda, P., McCarthy, F.M., & Bridges, S. (2012). Cross Ontology Data Mining in the Gene Ontology. MidSouth Computational Biology and Bioinformatics Society (MCBIOS). Oxford, MS.

Madsen, J. D., Maddox, V. L., Ervin, G. N., & Wersal, R. M. (2012). EDRR and the Invasive Plant Atlas of the MidSouth Project. Society for Range Management Symposium. Spokane, WA.

O'Hara C., & Aanstoos, J.V. (2012). Levee Assessment via Remote Sensing. 2012 Dams Sector Research and Development Workshop. Vicksburg, MS: U.S. Army Engineer Research and Development Center. [Document]

Moore, J. (2012). Lean Strategic Planning for Franklin Corp. Houston, MS.

Awards and Recognitions
(2012). Patterns of Faunal Diversity Associated with Altered Macrophyte Coverage. 2nd Place Student Paper Presentation. Biloxi, MS: Mississippi Chapter of the American Fisheries Society 2012 Annual Meeting. . .